MamPhEA: a web tool for mammalian phenotype enrichment analysis

SciMiner: Web-based literature mining tool for target identification and functional enrichment analysis SciMiner: Web-based literature mining tool for target identification and functional enrichment analysis

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis

UNLABELLED SciMiner is a web-based literature mining and functional analysis tool that identifies genes and proteins using a context specific analysis of MEDLINE abstracts and full texts. SciMiner accepts a free text query (PubMed Entrez search) or a list of PubMed identifiers as input. SciMiner uses both regular expression patterns and dictionaries of gene symbols and names compiled from multi...

gCMAPWeb : a web interface for gene-set enrichment analysis

This document provides technical detail on the use of the gCMAPWeb package, including a short description of input and output data and the configuration of the web application. For expanded examples using real biological datasets available from public databases, please refer to the tutorial vignette instead.

DroPhEA: Drosophila phenotype enrichment analysis for insect functional genomics

SUMMARY DroPhEA is a core module of a web application that facilitates research in insect functional genomics through enrichment analysis on mutant phenotypes of fruit fly (Drosophila melanogaster). The phenotypes investigated in the analyses can be predefined by FlyBase or customized by users. DroPhEA allows users to specify mutation or ortholog types, displays enriched term results in a hiera...

PGMapper: a web-based tool linking phenotype to genes

SUMMARY With the availability of whole genome sequence in many species, linkage analysis, positional cloning and microarray are gradually becoming powerful tools for investigating the links between phenotype and genotype or genes. However, in these methods, causative genes underlying a quantitative trait locus, or a disease, are usually located within a large genomic region or a large set of ge...